A Linux/Unix visualization software system for evaluation of hybridisation experiments.

Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, protein interaction network and functional genomics.

Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.

Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis.

DNA sequence assembler and finishing tools from the UW Genome Center.

BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.

The Washington University improved version of BLAST. Free for academic users.

William Pearson's package for fast sequence comparison tools.

A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product - now "abandonware."

An interactive tool for peptide and nucleotide sequence analysis.