An integrated multiple structure visualization and multiple sequence alignment application. Avaliable for Windows, Linux

An Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.

Text mining tool for genomics, proteomics platforms and drug discovery.

Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.

Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.

Offers a range of free software tools for annotating an entire genome, assembling sequences, gap closing and analysis of microarrays.

MARBL is a free (GPL) system to index the text portions of GenBank and associated NLM abstracts. Based on Mumps and the MDH.

An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.

Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.

Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.